3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07178

Details:

PFam ID : PF07178

PFam Domain Description : TraL protein

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 94

Average sequence length: 88.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07178	F2B8G1_9NEIS_6_102	89.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07178	F2B8G1_9NEIS_6_102	100

Sequence based PCA Plot of the family - PF07178 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=30

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay