3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07177

Details:

PFam ID : PF07177

PFam Domain Description : Neuralized

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 199

Average sequence length: 67.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07177	C5K722_9ALVE_529_571	63.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07177	C3Y611_BRAFL_314_385	100

Sequence based PCA Plot of the family - PF07177 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=17
Motif2 Start=36 Length=8
Motif3 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay