3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07176

Details:

PFam ID : PF07176

PFam Domain Description : Alpha/beta hydrolase of unknown function (DUF1400)

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 173

Average sequence length: 125.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07176	Q31QE5_SYNE7_22_147	61.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07176	B4WTJ4_9SYNE_33_169	100

Sequence based PCA Plot of the family - PF07176 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay