3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07175

Details:

PFam ID : PF07175

PFam Domain Description : Osteoregulin

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 35

Average sequence length: 169.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07175	E6JAJ8_9ACTO_32_219	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07175	D6C6M4_CAVPO_60_238	97.0

Sequence based PCA Plot of the family - PF07175 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=171 Length=8
Motif4 Start=156 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay