3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07174

Details:

PFam ID : PF07174

PFam Domain Description : Fibronectin-attachment protein (FAP)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 17

Average sequence length: 230.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07174	E6JAJ8_9ACTO_32_219	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07174	D5P6T0_9MYCO_1_215	100

Sequence based PCA Plot of the family - PF07174 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay