3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07171

Details:

PFam ID : PF07171

PFam Domain Description : MlrC C-terminus

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 265

Average sequence length: 175.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07171	A8TNB3_9PROT_299_423	95.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07171	B9KZG4_THERP_289_481	100

Sequence based PCA Plot of the family - PF07171 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=112 Length=8
Motif3 Start=81 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay