3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07168

Details:

PFam ID : PF07168

PFam Domain Description : Ureide permease

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 67

Average sequence length: 219.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07168	B3H4C7_ARATH_14_88	45.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07168	C3SA39_BRADI_10_155	100

Sequence based PCA Plot of the family - PF07168 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=9 Length=17
Motif2 Start=293 Length=8
Motif3 Start=347 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay