3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07162

Details:

PFam ID : PF07162

PFam Domain Description : Ciliary basal body-associated, B9 protein

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 194

Average sequence length: 158.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07162	Q4S9J5_TETNG_10_44	97.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07162	Q241P2_TETTH_47_269	100

Sequence based PCA Plot of the family - PF07162 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=100 Length=8
Motif3 Start=17 Length=8
Motif4 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay