3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07157

Details:

PFam ID : PF07157

PFam Domain Description : DNA circulation protein N-terminus

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 100

Average sequence length: 92.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07157	Q5E374_VIBF1_2_93	73.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07157	B8ICK8_METNO_4_97	100

Sequence based PCA Plot of the family - PF07157 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=24
Motif3 Start=57 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay