3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07155

Details:

PFam ID : PF07155

PFam Domain Description : ECF-type riboflavin transporter, S component

Number of Sequence in 50% Dataset : 174

Number of Sequence in Full Dataset : 610

Average sequence length: 160.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07155	B2JAQ8_NOSP7_1_154	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07155	B1L4K8_KORCO_13_108	99.3

Sequence based PCA Plot of the family - PF07155 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=186 Length=8
Motif4 Start=69 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay