3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07152

Details:

PFam ID : PF07152

PFam Domain Description : YaeQ protein

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 216

Average sequence length: 169.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07152	A3JE87_9ALTE_1_111	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07152	A9FTQ7_SORC5_1_181	100

Sequence based PCA Plot of the family - PF07152 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=63 Length=8
Motif2 Start=15 Length=8
Motif3 Start=81 Length=8
Motif4 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay