3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07147

Details:

PFam ID : PF07147

PFam Domain Description : Mitochondrial 28S ribosomal protein S30 (PDCD9)

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 93

Average sequence length: 315.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07147	A8XYJ5_CAEBR_290_417	97.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07147	Q7PUT8_ANOGA_1_437	100

Sequence based PCA Plot of the family - PF07147 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=64 Length=8
Motif4 Start=300 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay