3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07145

Details:

PFam ID : PF07145

PFam Domain Description : Ataxin-2 C-terminal region

Number of Sequence in 50% Dataset : 97

Number of Sequence in Full Dataset : 168

Average sequence length: 17.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07145	D8RY27_SELML_7_23	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07145	C9S7N8_VERA1_54_71	98.2

Sequence based PCA Plot of the family - PF07145 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay