3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07143

Details:

PFam ID : PF07143

PFam Domain Description : Hydroxyneurosporene synthase (CrtC)

Number of Sequence in 50% Dataset : 136

Number of Sequence in Full Dataset : 368

Average sequence length: 283.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07143	B4XN22_CHICK_162_301	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07143	A1ET33_VIBCH_1_168	100

Sequence based PCA Plot of the family - PF07143 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=43 Length=8
Motif2 Start=19 Length=8
Motif3 Start=79 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay