3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07137

Details:

PFam ID : PF07137

PFam Domain Description : Violaxanthin de-epoxidase (VDE)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 42

Average sequence length: 167.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07137	A4F2U3_PRUMU_10_129	78.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07137	F0YAL8_9STRA_138_356	100

Sequence based PCA Plot of the family - PF07137 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=48 Length=11
Motif4 Start=112 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay