3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07133

Details:

PFam ID : PF07133

PFam Domain Description : Merozoite surface protein (SPAM)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 38

Average sequence length: 158.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07133	E8HQK5_ECOLX_1_48	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07133	D9HNE5_PLAFA_546_724	100

Sequence based PCA Plot of the family - PF07133 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=8
Motif2 Start=11 Length=8
Motif3 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay