3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07127

Details:

PFam ID : PF07127

PFam Domain Description : Late nodulin protein

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 130

Average sequence length: 54.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07127	Q8RVZ6_TRIRP_1_68	98.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07127	Q8RVZ6_TRIRP_1_68	100

Sequence based PCA Plot of the family - PF07127 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=20
Motif2 Start=16 Length=8
Motif3 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay