3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07110

Details:

PFam ID : PF07110

PFam Domain Description : EthD domain

Number of Sequence in 50% Dataset : 156

Number of Sequence in Full Dataset : 419

Average sequence length: 86.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07110	B5U883_PEA_109_160	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07110	C7ZPT8_NECH7_730_811	99.5

Sequence based PCA Plot of the family - PF07110 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=33 Length=8
Motif4 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay