3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07109

Details:

PFam ID : PF07109

PFam Domain Description : Magnesium-protoporphyrin IX methyltransferase C-terminus

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 123

Average sequence length: 96.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07109	B5U883_PEA_109_160	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07109	Q8GE43_HELMO_132_228	100

Sequence based PCA Plot of the family - PF07109 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay