3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07106

Details:

PFam ID : PF07106

PFam Domain Description : Tat binding protein 1(TBP-1)-interacting protein (TBPIP)

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 134

Average sequence length: 150.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07106	F0Y1C6_9STRA_959_1127	78.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07106	E3KXX7_PUCGT_17_192	100

Sequence based PCA Plot of the family - PF07106 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=9 Length=27
Motif2 Start=161 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay