3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07100

Details:

PFam ID : PF07100

PFam Domain Description : Anabaena sensory rhodopsin transducer

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 34

Average sequence length: 114.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07100	D7BCW4_MEISD_7_127	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07100	D7BCW4_MEISD_7_127	100

Sequence based PCA Plot of the family - PF07100 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=26 Length=8
Motif3 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay