3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07095

Details:

PFam ID : PF07095

PFam Domain Description : Intracellular growth attenuator protein IgaA

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 52

Average sequence length: 581.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07095	Q5XWE0_PECCC_1_70	73.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07095	E7B839_YERE1_1_333	100

Sequence based PCA Plot of the family - PF07095 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=93 Length=8
Motif2 Start=227 Length=8
Motif3 Start=59 Length=8
Motif4 Start=78 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay