3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07088

Details:

PFam ID : PF07088

PFam Domain Description : GvpD gas vesicle protein

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 14

Average sequence length: 360.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07088	GVPD1_HALSA_23_536	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07088	Q64DG8_9ARCH_6_336	100

Sequence based PCA Plot of the family - PF07088 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=26 Length=8
Motif3 Start=1 Length=8
Motif4 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay