3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07085

Details:

PFam ID : PF07085

PFam Domain Description : DRTGG domain

Number of Sequence in 50% Dataset : 112

Number of Sequence in Full Dataset : 735

Average sequence length: 107.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07085	B9EQK8_SALSA_2_81	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07085	B9Y4M2_9FIRM_170_240	100

Sequence based PCA Plot of the family - PF07085 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=8
Motif2 Start=54 Length=11
Motif3 Start=9 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay