3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07084

Details:

PFam ID : PF07084

PFam Domain Description : Thyroid hormone-inducible hepatic protein Spot 14

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 87

Average sequence length: 119.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07084	B9EQK8_SALSA_2_81	27.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07084	E5S3H7_TRISP_14_163	100

Sequence based PCA Plot of the family - PF07084 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=115 Length=8
Motif4 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay