3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07074

Details:

PFam ID : PF07074

PFam Domain Description : Translocon-associated protein, gamma subunit (TRAP-gamma)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 40

Average sequence length: 141.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07074	F2UFC4_9EUKA_14_112	38.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07074	F2UFC4_9EUKA_14_112	100

Sequence based PCA Plot of the family - PF07074 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay