3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07073

Details:

PFam ID : PF07073

PFam Domain Description : Modulator of Rho-dependent transcription termination (ROF)

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 94

Average sequence length: 74.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07073	A8H694_SHEPA_1_101	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07073	A8H694_SHEPA_1_101	100

Sequence based PCA Plot of the family - PF07073 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=13 Length=8
Motif4 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay