3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07065

Details:

PFam ID : PF07065

PFam Domain Description : D123

Number of Sequence in 50% Dataset : 95

Number of Sequence in Full Dataset : 197

Average sequence length: 251.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07065	C7YXX6_NECH7_90_311	77.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07065	F2CUN3_HORVD_50_412	100

Sequence based PCA Plot of the family - PF07065 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=18 Length=18
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay