3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07063

Details:

PFam ID : PF07063

PFam Domain Description : Domain of unknown function (DUF1338)

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 271

Average sequence length: 318.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07063	B1N6J3_9PROT_49_334	59.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07063	B1N6J3_9PROT_49_334	99.2

Sequence based PCA Plot of the family - PF07063 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=257 Length=11
Motif2 Start=176 Length=8
Motif3 Start=290 Length=8
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay