3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07062

Details:

PFam ID : PF07062

PFam Domain Description : Clc-like

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 34

Average sequence length: 166.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07062	E1FL72_LOALO_8_111	86.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07062	A8PYE2_BRUMA_14_242	100

Sequence based PCA Plot of the family - PF07062 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=197 Length=8
Motif4 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay