3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07057

Details:

PFam ID : PF07057

PFam Domain Description : DNA helicase TraI

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 21

Average sequence length: 114.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07057	E7JYP2_SHISO_1_40	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07057	A4SUM5_AERS4_1393_1521	100

Sequence based PCA Plot of the family - PF07057 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=13 Length=8
Motif2 Start=29 Length=8
Motif3 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay