3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07052

Details:

PFam ID : PF07052

PFam Domain Description : Hepatocellular carcinoma-associated antigen 59

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 111

Average sequence length: 100.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07052	D2VYL3_NAEGR_168_299	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07052	YAT1_SCHPO_134_236	100

Sequence based PCA Plot of the family - PF07052 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=34 Length=8
Motif2 Start=16 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay