3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07047

Details:

PFam ID : PF07047

PFam Domain Description : Optic atrophy 3 protein (OPA3)

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 170

Average sequence length: 137.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07047	A8P6Y3_BRUMA_884_1013	75.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07047	Q4N3K8_THEPA_4_155	100

Sequence based PCA Plot of the family - PF07047 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=25 Length=8
Motif4 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay