3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07042

Details:

PFam ID : PF07042

PFam Domain Description : TrfA protein

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 63

Average sequence length: 223.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07042	A4MFD9_BURPS_1_163	88.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07042	Q6AII2_DESPS_66_356	100

Sequence based PCA Plot of the family - PF07042 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay