3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07035

Details:

PFam ID : PF07035

PFam Domain Description : Colon cancer-associated protein Mic1-like

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 73

Average sequence length: 149.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07035	B0EV11_ENTDI_401_545	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07035	F2UHH2_9EUKA_359_524	100

Sequence based PCA Plot of the family - PF07035 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay