3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07024

Details:

PFam ID : PF07024

PFam Domain Description : ImpE protein

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 90

Average sequence length: 122.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07024	D2AIZ6_SHIF2_145_210	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07024	E8UFP5_TAYEM_139_266	100

Sequence based PCA Plot of the family - PF07024 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=17
Motif2 Start=14 Length=8
Motif3 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay