3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07022

Details:

PFam ID : PF07022

PFam Domain Description : Bacteriophage CI repressor helix-turn-helix domain

Number of Sequence in 50% Dataset : 83

Number of Sequence in Full Dataset : 269

Average sequence length: 63.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07022	E7I528_ECOLX_1_34	91.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07022	C4ZCD4_EUBR3_2_69	100

Sequence based PCA Plot of the family - PF07022 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay