3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07021

Details:

PFam ID : PF07021

PFam Domain Description : Methionine biosynthesis protein MetW

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 201

Average sequence length: 187.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07021	B1I6U5_DESAP_10_149	89.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07021	F2ATX2_RHOBA_400_601	100

Sequence based PCA Plot of the family - PF07021 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=40 Length=8
Motif2 Start=115 Length=8
Motif3 Start=77 Length=11
Motif4 Start=16 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay