3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07017

Details:

PFam ID : PF07017

PFam Domain Description : Antimicrobial peptide resistance and lipid A acylation protein PagP

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 70

Average sequence length: 140.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07017	E8P1R0_YERPH_53_173	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07017	E6PRU4_9ZZZZ_47_195	100

Sequence based PCA Plot of the family - PF07017 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=44 Length=11
Motif3 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay