3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07016

Details:

PFam ID : PF07016

PFam Domain Description : Cysteine-rich acidic integral membrane protein precursor

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 6

Average sequence length: 19.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07016	A3K4N0_9RHOB_5_239	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07016	Q38AP5_9TRYP_61_84	100

Sequence based PCA Plot of the family - PF07016 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay