3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07015

Details:

PFam ID : PF07015

PFam Domain Description : VirC1 protein

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 44

Average sequence length: 205.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07015	A3K4N0_9RHOB_5_239	88.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07015	A3K4N0_9RHOB_5_239	100

Sequence based PCA Plot of the family - PF07015 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=36 Length=8
Motif3 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay