3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07014

Details:

PFam ID : PF07014

PFam Domain Description : Hs1pro-1 protein C-terminus

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 22

Average sequence length: 238.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07014	B7FJ45_MEDTR_191_411	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07014	B7FJ45_MEDTR_191_411	100

Sequence based PCA Plot of the family - PF07014 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=109 Length=8
Motif3 Start=9 Length=11
Motif4 Start=161 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay