3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07002

Details:

PFam ID : PF07002

PFam Domain Description : Copine

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 322

Average sequence length: 134.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07002	D2W2A2_NAEGR_473_629	68.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07002	D3BTI2_POLPA_307_462	100

Sequence based PCA Plot of the family - PF07002 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=78 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=98 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay