3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07001

Details:

PFam ID : PF07001

PFam Domain Description : BAT2 N-terminus

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 50

Average sequence length: 160.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07001	E9G8U2_DAPPU_1_84	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07001	E5S315_TRISP_1_198	100

Sequence based PCA Plot of the family - PF07001 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=18 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay