3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06990

Details:

PFam ID : PF06990

PFam Domain Description : Galactose-3-O-sulfotransferase

Number of Sequence in 50% Dataset : 176

Number of Sequence in Full Dataset : 284

Average sequence length: 268.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06990	E4Y1N1_OIKDI_3_103	83.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06990	F2U1Q2_9EUKA_2_407	99.2

Sequence based PCA Plot of the family - PF06990 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay