3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06989

Details:

PFam ID : PF06989

PFam Domain Description : BAALC N-terminus

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 7

Average sequence length: 41.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06989	Q4RR60_TETNG_3_51	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06989	Q4RR60_TETNG_3_51	100

Sequence based PCA Plot of the family - PF06989 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=11 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay