3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06988

Details:

PFam ID : PF06988

PFam Domain Description : NifT/FixU protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 94

Average sequence length: 63

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06988	B4WR32_9SYNE_1_50	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06988	E4TG48_CALNY_1_63	97.8

Sequence based PCA Plot of the family - PF06988 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=42 Length=8
Motif2 Start=29 Length=8
Motif3 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay