3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06984

Details:

PFam ID : PF06984

PFam Domain Description : Mitochondrial 39-S ribosomal protein L47 (MRP-L47)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 140

Average sequence length: 86.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06984	B1Y1C6_LEPCP_3_144	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06984	E3KX25_PUCGT_261_359	100

Sequence based PCA Plot of the family - PF06984 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay