3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06973

Details:

PFam ID : PF06973

PFam Domain Description : Domain of unknown function (DUF1297)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 102

Average sequence length: 181.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06973	C5A6A6_THEGJ_1_75	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06973	D8GQE4_CLOLD_4_95	100

Sequence based PCA Plot of the family - PF06973 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=6 Length=17
Motif2 Start=35 Length=8
Motif3 Start=54 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay