3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06969

Details:

PFam ID : PF06969

PFam Domain Description : HemN C-terminal domain

Number of Sequence in 50% Dataset : 275

Number of Sequence in Full Dataset : 1521

Average sequence length: 65.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06969	B8FRB6_DESHD_291_356	71.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06969	B2FUK6_STRMK_323_391	100

Sequence based PCA Plot of the family - PF06969 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=26 Length=8
Motif3 Start=58 Length=8
Motif4 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay